Variant report

Variant	rs9844501
Chromosome Location	chr3:69355917-69355918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:69210469..69211368-chr3:69355626..69356180,3	K562	blood:
2	chr3:69170350..69171021-chr3:69355165..69356027,2	MCF-7	breast:
3	chr3:69209685..69210255-chr3:69355627..69356434,2	MCF-7	breast:
4	chr3:69285764..69286627-chr3:69355346..69356110,2	MCF-7	breast:
5	chr3:69210499..69211408-chr3:69355207..69356264,7	MCF-7	breast:
6	chr3:69208107..69208622-chr3:69355276..69356158,2	MCF-7	breast:
7	chr3:69221873..69224471-chr3:69354670..69357098,2	MCF-7	breast:
8	chr3:69210554..69213653-chr3:69354027..69357404,3	MCF-7	breast:
9	chr3:69210548..69211482-chr3:69355203..69356159,9	MCF-7	breast:

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28642172	1.00[EUR][1000 genomes]
rs6549200	0.87[YRI][hapmap]
rs6774290	0.85[CEU][hapmap]
rs9820308	0.92[CEU][hapmap];0.81[AMR][1000 genomes]
rs9820322	0.81[AMR][1000 genomes]
rs9869925	0.86[CEU][hapmap]
rs9876410	1.00[CEU][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69339600-69357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69343800-69362200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:69344000-69370000	Weak transcription	Fetal Brain Male	brain
4	chr3:69344000-69370000	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:69346800-69356800	Weak transcription	Thymus	Thymus
6	chr3:69347800-69357600	Weak transcription	Fetal Stomach	stomach
7	chr3:69348000-69356600	Weak transcription	Lung	lung
8	chr3:69348000-69369400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:69349200-69368800	Weak transcription	Fetal Brain Female	brain
10	chr3:69349600-69356800	Weak transcription	Fetal Thymus	thymus
11	chr3:69350000-69374200	Weak transcription	Aorta	Aorta
12	chr3:69350600-69357200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:69351600-69356800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr3:69352000-69356800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:69352400-69357000	Weak transcription	Dnd41	blood
16	chr3:69353600-69356000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:69353800-69356200	Enhancers	HUVEC	blood vessel
18	chr3:69353800-69356400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:69353800-69357400	Enhancers	Brain Anterior Caudate	brain
20	chr3:69354000-69356000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr3:69354000-69356000	Genic enhancers	NHEK	skin
22	chr3:69354000-69356200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:69354400-69356200	Weak transcription	Fetal Intestine Small	intestine
24	chr3:69354600-69356800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:69354600-69357600	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr3:69355000-69356000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr3:69355200-69357800	Enhancers	Brain Substantia Nigra	brain
28	chr3:69355200-69359000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:69355400-69356000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr3:69355400-69356000	Enhancers	H1 Cell Line	embryonic stem cell
31	chr3:69355400-69356000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:69355400-69356000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr3:69355400-69356000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr3:69355400-69356000	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr3:69355400-69356000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:69355400-69356000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr3:69355400-69356000	Enhancers	Rectal Smooth Muscle	rectum
38	chr3:69355400-69356000	Enhancers	Hela-S3	cervix
39	chr3:69355400-69356000	Enhancers	HMEC	breast
40	chr3:69355400-69356200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:69355400-69356200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:69355400-69356200	Enhancers	Muscle Satellite Cultured Cells	--
43	chr3:69355400-69356200	Enhancers	Adipose Nuclei	Adipose
44	chr3:69355400-69356200	Enhancers	Fetal Heart	heart
45	chr3:69355400-69356200	Enhancers	HSMM	muscle
46	chr3:69355400-69356200	Enhancers	NHLF	lung
47	chr3:69355400-69356400	Enhancers	Colon Smooth Muscle	Colon
48	chr3:69355400-69356400	Enhancers	HSMMtube	muscle
49	chr3:69355400-69356800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:69355400-69357400	Enhancers	Brain Cingulate Gyrus	brain

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