Variant report

Variant	rs9844754
Chromosome Location	chr3:134534403-134534404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1004551	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs11712035	0.84[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34407968	0.82[ASN][1000 genomes]
rs4955455	0.85[CEU][hapmap];0.98[EUR][1000 genomes]
rs4955456	0.98[EUR][1000 genomes]
rs4955501	0.98[EUR][1000 genomes]
rs4955502	0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6439522	0.82[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6793917	0.98[EUR][1000 genomes]
rs935515	0.84[EUR][1000 genomes]
rs9850491	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9844754	EPHB1	cis	Artery Tibial	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134529600-134541800	Weak transcription	Fetal Brain Female	brain
2	chr3:134529600-134542600	Weak transcription	Brain Germinal Matrix	brain
3	chr3:134529600-134546400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:134530000-134535600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:134530000-134535600	Weak transcription	GM12878-XiMat	blood
6	chr3:134530000-134540800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:134530400-134534600	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:134530800-134541000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:134531200-134537800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:134533400-134537400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr3:134533600-134537000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr3:134533800-134535200	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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