Variant report

Variant	rs9844972
Chromosome Location	chr3:150097635-150097636
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150095471..150097889-chr3:150125779..150128090,2	MCF-7	breast:
2	chr3:150096369..150098027-chr3:150123983..150126860,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs62271373	0.93[AMR][1000 genomes]
rs62271395	0.83[AMR][1000 genomes]
rs6767155	0.93[AMR][1000 genomes]
rs7614962	0.93[AMR][1000 genomes]
rs7617699	0.81[AMR][1000 genomes]
rs9810244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9862778	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	esv1828464	chr3:150096071-150149868	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150086200-150102200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150090200-150124600	Weak transcription	Aorta	Aorta
3	chr3:150090800-150107000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:150090800-150108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:150090800-150111000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:150090800-150111000	Weak transcription	NHEK	skin
7	chr3:150091800-150101800	Weak transcription	Primary B cells from cord blood	blood
8	chr3:150093200-150100600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:150094600-150102400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:150094600-150102600	Weak transcription	Left Ventricle	heart
11	chr3:150094600-150106200	Weak transcription	HSMM	muscle
12	chr3:150094600-150108800	Weak transcription	NHLF	lung
13	chr3:150094800-150101800	Weak transcription	K562	blood
14	chr3:150094800-150102200	Weak transcription	Fetal Intestine Large	intestine
15	chr3:150094800-150108200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:150096000-150098000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr3:150096000-150105200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:150096200-150097800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:150096200-150108400	Weak transcription	A549	lung
20	chr3:150096600-150097800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr3:150096600-150098000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:150097400-150098000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr3:150097400-150098000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr3:150097600-150097800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr3:150097600-150098000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr3:150097600-150098000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr3:150097600-150102800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr3:150097600-150103400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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