Variant report

Variant	rs984569
Chromosome Location	chr6:57130756-57130757
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:57126469..57129335-chr6:57130714..57132915,2	MCF-7	breast:
2	chr6:57125429..57127143-chr6:57128713..57131182,2	K562	blood:
3	chr6:57128467..57134592-chr6:57180122..57183939,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146143	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs887550	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1034095	chr6:57102042-57162808	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs984569	DNAJA3	trans	lymphoblastoid	RTeQTL

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57125200-57133200	Enhancers	Rectal Smooth Muscle	rectum
2	chr6:57126400-57130800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:57127800-57130800	Weak transcription	Ovary	ovary
4	chr6:57127800-57132200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:57128400-57132600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:57128800-57132200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:57128800-57132600	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:57129600-57130800	Enhancers	Fetal Lung	lung
9	chr6:57129800-57131400	Enhancers	HSMM	muscle
10	chr6:57129800-57132800	Enhancers	HSMMtube	muscle
11	chr6:57130000-57131400	Enhancers	HUVEC	blood vessel
12	chr6:57130200-57131000	Active TSS	Fetal Brain Male	brain
13	chr6:57130200-57131200	Flanking Active TSS	NHLF	lung
14	chr6:57130200-57131400	Enhancers	Fetal Stomach	stomach
15	chr6:57130200-57132400	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr6:57130400-57130800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:57130400-57131000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:57130400-57131000	Enhancers	NHEK	skin
19	chr6:57130400-57131200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:57130400-57132000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:57130400-57132200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:57130400-57133000	Enhancers	Stomach Smooth Muscle	stomach
23	chr6:57130600-57130800	Flanking Active TSS	Colon Smooth Muscle	Colon
24	chr6:57130600-57130800	Flanking Active TSS	NH-A	brain
25	chr6:57130600-57131000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:57130600-57131000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:57130600-57131000	Enhancers	Hela-S3	cervix
28	chr6:57130600-57131000	Flanking Active TSS	Osteobl	bone
29	chr6:57130600-57131200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:57130600-57131200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:57130600-57131200	Enhancers	HMEC	breast
32	chr6:57130600-57131200	Flanking Active TSS	NHDF-Ad	bronchial

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