Variant report

Variant	rs9846392
Chromosome Location	chr3:154989004-154989005
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:154986811..154989057-chr3:154993128..154995510,2	K562	blood:
2	chr3:154978023..154982772-chr3:154984612..154989372,6	K562	blood:
3	chr3:154983355..154985123-chr3:154986794..154989728,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1021214	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1038484	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12330640	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12330689	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1601383	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1872413	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2872694	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4679740	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4679741	0.86[ASN][1000 genomes]
rs58524948	0.85[AMR][1000 genomes]
rs62279085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814433	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9855353	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9873251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv829762	chr3:154879350-155052986	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154971600-154996200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:154981200-154995200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:154987400-154996200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:154987800-154989200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:154987800-154989200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:154987800-154989200	Enhancers	NHEK	skin
7	chr3:154988200-154989400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:154988200-154989600	Enhancers	Placenta	Placenta
9	chr3:154988400-154989200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:154988400-154989200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:154988400-154989200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:154988400-154989200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:154988400-154989400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr3:154988600-154989200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:154988600-154989200	Enhancers	Dnd41	blood
16	chr3:154988600-154989400	Enhancers	Esophagus	oesophagus
17	chr3:154988600-154990000	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
18	chr3:154988800-154989200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:154988800-154989400	Enhancers	K562	blood
20	chr3:154988800-154989800	Active TSS	HUES6 Cell Line	embryonic stem cell

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