Variant report

Variant	rs984664
Chromosome Location	chr5:57910859-57910860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs158965	0.82[YRI][hapmap]
rs158968	0.82[YRI][hapmap]
rs158970	0.82[ASW][hapmap];0.82[YRI][hapmap]
rs158974	1.00[ASW][hapmap];0.82[YRI][hapmap]
rs292970	1.00[ASW][hapmap];0.82[YRI][hapmap]
rs292971	0.82[YRI][hapmap]
rs292982	0.91[YRI][hapmap]
rs292985	1.00[ASW][hapmap];0.82[YRI][hapmap]
rs433188	0.82[YRI][hapmap]
rs435514	0.91[YRI][hapmap]
rs442414	0.82[YRI][hapmap]
rs449867	0.82[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links