Variant report

Variant	rs9847354
Chromosome Location	chr3:179667006-179667007
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12489992	0.90[ASN][1000 genomes]
rs1524514	0.85[ASN][1000 genomes]
rs34638709	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73057311	0.80[ASN][1000 genomes]
rs73057355	0.85[ASN][1000 genomes]
rs73057366	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179660400-179667600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:179660600-179667400	Weak transcription	Thymus	Thymus
3	chr3:179660600-179680800	Weak transcription	Pancreas	Pancrea
4	chr3:179661200-179667400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:179661200-179671400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:179664200-179667400	Weak transcription	Dnd41	blood
7	chr3:179664800-179667200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:179664800-179667400	Weak transcription	Brain Angular Gyrus	brain
9	chr3:179666000-179667800	Enhancers	Fetal Stomach	stomach
10	chr3:179666000-179670200	Enhancers	Brain Cingulate Gyrus	brain
11	chr3:179666200-179667600	Enhancers	Brain Anterior Caudate	brain
12	chr3:179666200-179669000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr3:179666200-179669000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:179666200-179669400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr3:179666400-179667400	Weak transcription	Fetal Thymus	thymus
16	chr3:179666400-179668800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:179666400-179670200	Enhancers	Brain Hippocampus Middle	brain
18	chr3:179666600-179667400	Weak transcription	Fetal Kidney	kidney
19	chr3:179666800-179667200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:179666800-179667200	Weak transcription	Brain Substantia Nigra	brain
21	chr3:179666800-179669000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr3:179667000-179668800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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