Variant report

Variant	rs9848224
Chromosome Location	chr3:79593020-79593021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11127649	0.81[CHB][hapmap]
rs11707288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13084871	0.83[CEU][hapmap]
rs4279056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4361245	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4389443	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs4527338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4998490	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs6548625	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs6548626	0.83[EUR][1000 genomes]
rs6548627	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs6548628	0.81[AMR][1000 genomes]
rs6795790	0.81[CHB][hapmap]
rs7431291	0.82[CHB][hapmap]
rs7432656	0.85[CHB][hapmap]
rs7614913	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs7617476	0.83[EUR][1000 genomes]
rs7623728	0.81[CHB][hapmap]
rs7623809	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs7626242	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs7651819	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs9815393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9826366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9834988	0.81[CHB][hapmap]
rs9838937	0.80[CHB][hapmap]
rs9842315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9848085	0.83[AMR][1000 genomes]
rs9848827	0.88[CEU][hapmap]
rs9852990	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9853895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9857859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9869846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs9871445	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs9872108	0.81[CHB][hapmap]
rs9873952	0.84[CEU][hapmap]
rs9876238	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394288	chr3:79545122-79715746	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877021	chr3:79560604-79892470	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv877022	chr3:79585158-79760774	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79592400-79593200	Enhancers	Brain Germinal Matrix	brain

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