Variant report

Variant	rs984924
Chromosome Location	chr4:82120912-82120913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10002599	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10003341	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10005912	1.00[CEU][hapmap];0.80[GIH][hapmap];0.93[MEX][hapmap];0.84[EUR][1000 genomes]
rs10006560	0.98[EUR][1000 genomes]
rs10516650	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10516651	1.00[CEU][hapmap]
rs11099460	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11722020	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11933194	1.00[CEU][hapmap];0.80[GIH][hapmap];0.93[MEX][hapmap];0.84[EUR][1000 genomes]
rs11941219	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12330930	1.00[CEU][hapmap];0.80[GIH][hapmap];0.93[MEX][hapmap];0.84[EUR][1000 genomes]
rs12331759	0.84[EUR][1000 genomes]
rs12331821	0.84[EUR][1000 genomes]
rs12331945	0.98[EUR][1000 genomes]
rs12332035	1.00[CEU][hapmap];0.80[GIH][hapmap];0.93[MEX][hapmap];0.84[EUR][1000 genomes]
rs12643702	0.84[EUR][1000 genomes]
rs12651341	0.81[EUR][1000 genomes]
rs1517547	1.00[CEU][hapmap];0.80[GIH][hapmap];0.93[MEX][hapmap];0.84[EUR][1000 genomes]
rs1545287	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1546651	1.00[CEU][hapmap];0.80[GIH][hapmap];0.93[MEX][hapmap];0.84[EUR][1000 genomes]
rs1972127	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs28413060	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28445932	0.84[EUR][1000 genomes]
rs28491787	0.84[EUR][1000 genomes]
rs28508156	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28669195	0.84[EUR][1000 genomes]
rs2868141	0.84[EUR][1000 genomes]
rs28782932	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28783134	0.84[EUR][1000 genomes]
rs28844140	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3733550	1.00[CEU][hapmap];0.80[GIH][hapmap];0.85[MEX][hapmap];0.81[EUR][1000 genomes]
rs3943629	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4149	0.81[TSI][hapmap]
rs4566647	0.82[EUR][1000 genomes]
rs56008646	0.84[EUR][1000 genomes]
rs56061857	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56845428	0.98[EUR][1000 genomes]
rs59441619	0.92[EUR][1000 genomes]
rs59896344	0.85[EUR][1000 genomes]
rs60111302	0.85[EUR][1000 genomes]
rs60138132	0.94[EUR][1000 genomes]
rs60510576	0.92[EUR][1000 genomes]
rs60808851	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6811913	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6828114	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6842611	0.98[EUR][1000 genomes]
rs72878860	0.81[EUR][1000 genomes]
rs72879491	0.84[EUR][1000 genomes]
rs72879493	0.84[EUR][1000 genomes]
rs72879502	0.80[EUR][1000 genomes]
rs72880604	0.85[EUR][1000 genomes]
rs72881305	0.80[EUR][1000 genomes]
rs7659331	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7680521	0.98[EUR][1000 genomes]
rs7687258	0.82[EUR][1000 genomes]
rs986290	1.00[CEU][hapmap];0.80[GIH][hapmap];0.93[MEX][hapmap];0.84[EUR][1000 genomes]
rs9990953	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9990963	0.98[EUR][1000 genomes]
rs9994631	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82116000-82121000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:82116200-82121200	Weak transcription	NHLF	lung
3	chr4:82117400-82121000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:82117600-82121200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:82118600-82121200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:82119800-82121800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:82119800-82125000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:82120000-82121000	Weak transcription	NHDF-Ad	bronchial
9	chr4:82120000-82121200	Weak transcription	Gastric	stomach
10	chr4:82120000-82123200	Weak transcription	Fetal Brain Female	brain
11	chr4:82120200-82121000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:82120200-82121400	Weak transcription	Fetal Intestine Large	intestine
13	chr4:82120200-82125800	Weak transcription	Fetal Intestine Small	intestine
14	chr4:82120800-82122000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:82120800-82122200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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