Variant report
| Variant | rs984932 |
|---|---|
| Chromosome Location | chr6:142803037-142803038 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10484733 | 0.84[CEU][hapmap] |
| rs11155242 | 0.81[GIH][hapmap] |
| rs11759653 | 0.84[CEU][hapmap] |
| rs12189838 | 0.88[EUR][1000 genomes] |
| rs12190271 | 0.84[CEU][hapmap];0.81[GIH][hapmap] |
| rs12197866 | 0.92[CEU][hapmap] |
| rs13198644 | 0.87[EUR][1000 genomes] |
| rs1329705 | 0.84[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs1928528 | 0.87[EUR][1000 genomes] |
| rs2294775 | 0.81[GIH][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs262117 | 0.88[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs262120 | 0.83[AFR][1000 genomes] |
| rs3817928 | 0.81[EUR][1000 genomes] |
| rs4304190 | 0.87[EUR][1000 genomes] |
| rs643975 | 0.83[AFR][1000 genomes] |
| rs6570511 | 0.84[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs6900087 | 0.84[CEU][hapmap] |
| rs6901807 | 0.88[EUR][1000 genomes] |
| rs6906468 | 0.88[EUR][1000 genomes] |
| rs6912639 | 0.88[EUR][1000 genomes] |
| rs6922607 | 0.84[CEU][hapmap] |
| rs6925979 | 0.92[CEU][hapmap] |
| rs7756434 | 0.88[EUR][1000 genomes] |
| rs7765770 | 0.84[CEU][hapmap] |
| rs7776356 | 0.87[EUR][1000 genomes] |
| rs9321870 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9373347 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949088 | chr6:142561402-143128849 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | esv275529 | chr6:142800326-142804478 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs984932 | SF3B5 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:142796000-142806200 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
