Variant report

Variant	rs9849379
Chromosome Location	chr3:118198045-118198046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12492016	0.93[ASN][1000 genomes]
rs28410918	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28645420	0.91[ASN][1000 genomes]
rs4688115	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7637943	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880522	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460829	chr3:118195601-118229370	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591349	chr3:118195601-118229370	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9849379	ILDR1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118196400-118198200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:118196800-118198200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:118197000-118198600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:118197200-118199400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:118197200-118199600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:118197200-118199600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr3:118197200-118200800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:118197200-118201200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:118197200-118201200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:118197400-118198600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:118197600-118199800	Enhancers	GM12878-XiMat	blood
12	chr3:118197800-118198200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:118198000-118198400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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