Variant report

Variant	rs9849445
Chromosome Location	chr3:111044043-111044044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28535203	0.80[AMR][1000 genomes]
rs6437958	1.00[ASN][1000 genomes]
rs6437959	1.00[ASN][1000 genomes]
rs6437960	1.00[ASN][1000 genomes]
rs6437962	1.00[ASN][1000 genomes]
rs9849375	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111033600-111044200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:111035400-111044200	Weak transcription	HSMMtube	muscle
3	chr3:111041000-111045000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:111041600-111047200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:111042000-111044400	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:111042600-111044400	Flanking Active TSS	Dnd41	blood
7	chr3:111042800-111044200	Enhancers	Primary B cells from cord blood	blood
8	chr3:111043200-111044200	Weak transcription	Adipose Nuclei	Adipose
9	chr3:111043200-111044400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr3:111043400-111044400	Enhancers	Thymus	Thymus
11	chr3:111043400-111044600	Enhancers	Fetal Thymus	thymus
12	chr3:111043400-111045400	Enhancers	HSMM	muscle
13	chr3:111043600-111044200	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr3:111043600-111044400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:111043600-111044600	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr3:111043600-111044800	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:111043600-111045200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr3:111043600-111045400	Enhancers	NHDF-Ad	bronchial
19	chr3:111043600-111045800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:111043800-111044200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr3:111043800-111044200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr3:111043800-111044400	Enhancers	Primary T cells from cord blood	blood
23	chr3:111043800-111044600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:111043800-111045000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr3:111043800-111045200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:111043800-111045200	Enhancers	GM12878-XiMat	blood
27	chr3:111043800-111052200	Weak transcription	HMEC	breast
28	chr3:111044000-111044400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:111044000-111044400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:111044000-111044400	Enhancers	Primary T cells fromperipheralblood	blood
31	chr3:111044000-111044600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:111044000-111045400	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links