Variant report

Variant	rs9851634
Chromosome Location	chr3:157924594-157924595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28396261	0.81[AFR][1000 genomes]
rs6765159	0.81[AFR][1000 genomes]
rs9838425	0.84[AFR][1000 genomes]
rs9870885	0.81[AFR][1000 genomes]
rs9877843	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1819976	chr3:157923372-157945591	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157914200-157984400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:157917000-157926200	Weak transcription	Ovary	ovary
3	chr3:157918000-157938000	Weak transcription	Left Ventricle	heart
4	chr3:157919200-157958000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr3:157919600-157934600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:157919800-157928000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:157919800-157930400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:157919800-157931600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr3:157919800-157952800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:157920000-157935000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr3:157920200-157957000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:157920800-157924600	Weak transcription	HSMM	muscle
13	chr3:157921000-157937600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:157921200-157926800	Weak transcription	Primary B cells from cord blood	blood
15	chr3:157921200-157936000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr3:157921600-157926800	Weak transcription	Dnd41	blood
17	chr3:157921600-157936400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr3:157922000-157950000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:157924200-157925200	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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