Variant report

Variant	rs9851689
Chromosome Location	chr3:112347148-112347149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:112346448..112348470-chr3:112351397..112354527,3	K562	blood:
2	chr3:112340785..112342316-chr3:112345669..112347185,2	K562	blood:
3	chr3:112345807..112347759-chr3:112347769..112350964,3	MCF-7	breast:
4	chr3:112346979..112353983-chr3:112357134..112359925,9	K562	blood:
5	chr3:112344415..112347197-chr3:112350553..112352868,2	K562	blood:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10934178	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934179	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11712917	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388443	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16859870	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16859871	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4682418	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349537	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7349538	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288955	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9833212	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9861342	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9870432	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9881785	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112312600-112347200	Weak transcription	Fetal Intestine Large	intestine
2	chr3:112331200-112351600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:112331400-112354800	Weak transcription	Psoas Muscle	Psoas
4	chr3:112336200-112347400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:112336200-112351600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:112336600-112351400	Weak transcription	Fetal Lung	lung
7	chr3:112336600-112355800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:112338000-112349400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:112340800-112348200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:112341000-112348400	Weak transcription	Fetal Kidney	kidney
11	chr3:112341400-112351400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:112341800-112347800	Strong transcription	Placenta Amnion	Placenta Amnion
13	chr3:112341800-112348000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:112341800-112348200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:112342200-112348200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:112342400-112348200	Strong transcription	HSMM	muscle
17	chr3:112342600-112350000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:112342600-112359600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:112342800-112348200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr3:112342800-112348200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr3:112342800-112348200	Weak transcription	A549	lung
22	chr3:112342800-112350000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr3:112343000-112348200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:112343000-112348200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:112343000-112348600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr3:112343000-112349600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr3:112343000-112351600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:112343200-112348200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:112343400-112348200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr3:112343400-112348200	Weak transcription	Hela-S3	cervix
31	chr3:112343400-112358000	Weak transcription	Pancreas	Pancrea
32	chr3:112344200-112348200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:112344200-112348200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:112344200-112348200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr3:112344400-112348200	Weak transcription	HMEC	breast
36	chr3:112344400-112348200	Weak transcription	NHEK	skin
37	chr3:112344800-112347400	Enhancers	Ovary	ovary
38	chr3:112344800-112350000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:112345000-112347600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:112345000-112347600	Genic enhancers	NHDF-Ad	bronchial
41	chr3:112345000-112353800	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr3:112345200-112359400	Weak transcription	Esophagus	oesophagus
43	chr3:112345800-112348200	Strong transcription	NH-A	brain
44	chr3:112346000-112347800	Enhancers	Colon Smooth Muscle	Colon
45	chr3:112346000-112350400	Enhancers	Adipose Nuclei	Adipose
46	chr3:112346200-112347600	Enhancers	Rectal Smooth Muscle	rectum
47	chr3:112346200-112349400	Enhancers	HUVEC	blood vessel
48	chr3:112346200-112352400	Weak transcription	Brain Anterior Caudate	brain
49	chr3:112346200-112352400	Weak transcription	Fetal Brain Female	brain
50	chr3:112346400-112354000	Weak transcription	Fetal Heart	heart

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