Variant report

Variant	rs9852313
Chromosome Location	chr3:100250859-100250860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100248745..100251496-chr3:100279938..100282023,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs59562996	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100238000-100252600	Weak transcription	Fetal Intestine Small	intestine
2	chr3:100238000-100265400	Weak transcription	HSMMtube	muscle
3	chr3:100241000-100299800	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:100241200-100251800	Weak transcription	Hela-S3	cervix
5	chr3:100242000-100253200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:100242400-100265000	Weak transcription	HepG2	liver
7	chr3:100242400-100268000	Weak transcription	Ovary	ovary
8	chr3:100244600-100261400	Weak transcription	Fetal Lung	lung
9	chr3:100244800-100253000	Weak transcription	Esophagus	oesophagus
10	chr3:100244800-100255400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:100244800-100257800	Weak transcription	Spleen	Spleen
12	chr3:100244800-100267000	Weak transcription	HSMM	muscle
13	chr3:100245200-100252000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:100245200-100252200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:100245200-100252200	Weak transcription	Aorta	Aorta
16	chr3:100245200-100253200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:100245400-100252200	Weak transcription	Fetal Stomach	stomach
18	chr3:100245400-100252400	Weak transcription	Adipose Nuclei	Adipose
19	chr3:100245400-100255800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:100245600-100254600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:100245800-100253200	Weak transcription	HMEC	breast
22	chr3:100246200-100252000	Weak transcription	NHEK	skin
23	chr3:100246400-100252000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:100246600-100251000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:100246600-100251400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:100247200-100253200	Weak transcription	Liver	Liver
27	chr3:100249400-100251400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:100249400-100252400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:100249400-100252400	Weak transcription	Gastric	stomach
30	chr3:100250200-100253800	Enhancers	Brain Germinal Matrix	brain
31	chr3:100250800-100251600	Enhancers	Brain Cingulate Gyrus	brain
32	chr3:100250800-100253800	Enhancers	Placenta Amnion	Placenta Amnion
33	chr3:100250800-100255200	Enhancers	NHDF-Ad	bronchial

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