Variant report

Variant	rs9853810
Chromosome Location	chr3:74970564-74970565
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11920209	0.85[EUR][1000 genomes]
rs12054432	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap]
rs12486094	0.94[CEU][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap]
rs4276232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340743	0.83[EUR][1000 genomes]
rs4346587	0.83[EUR][1000 genomes]
rs4467494	0.83[EUR][1000 genomes]
rs4640613	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4677433	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4677447	0.94[CEU][hapmap];0.85[JPT][hapmap]
rs5009222	1.00[CEU][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap]
rs57623828	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6549681	0.81[EUR][1000 genomes]
rs6786444	0.83[EUR][1000 genomes]
rs6801622	0.83[EUR][1000 genomes]
rs7617228	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629942	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9829717	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9869833	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529994	chr3:74720752-75471887	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv916594	chr3:74943399-75540161	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	esv3526553	chr3:74970409-74970759	Enhancers	n/a	n/a	inside rSNPs	n/a
4	esv3526551	chr3:74970467-74970858	Enhancers	n/a	n/a	inside rSNPs	n/a
5	esv1851336	chr3:74970564-75280989	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9853810	ZNF717	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:74970400-74971000	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links