Variant report

Variant	rs9853827
Chromosome Location	chr3:139002193-139002194
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10212419	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12695694	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6802174	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9866054	1.00[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591856	chr3:139000844-139037832	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1005158	chr3:139001736-139073011	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138999000-139006800	Weak transcription	Pancreas	Pancrea
2	chr3:139000600-139003000	Flanking Active TSS	NHDF-Ad	bronchial
3	chr3:139000800-139002600	Enhancers	K562	blood
4	chr3:139000800-139004400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:139000800-139011200	Weak transcription	NHLF	lung
6	chr3:139001200-139002800	Weak transcription	Ovary	ovary
7	chr3:139001200-139003200	Enhancers	Brain Cingulate Gyrus	brain
8	chr3:139001200-139003200	Enhancers	Brain Hippocampus Middle	brain
9	chr3:139001200-139004600	Weak transcription	Right Ventricle	heart
10	chr3:139001400-139003200	Enhancers	Brain Angular Gyrus	brain
11	chr3:139001600-139002800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:139001600-139003600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:139001600-139005000	Weak transcription	Left Ventricle	heart
14	chr3:139001800-139002200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:139001800-139002200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:139001800-139002600	Weak transcription	Brain Substantia Nigra	brain
17	chr3:139001800-139002800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:139002000-139011600	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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