Variant report

Variant	rs9854762
Chromosome Location	chr3:155006377-155006378
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155001798..155003575-chr3:155005784..155007790,2	MCF-7	breast:
2	chr3:155004156..155007440-chr3:155008596..155011698,3	MCF-7	breast:
3	chr3:155004817..155006819-chr3:155007459..155010453,2	K562	blood:

Variant related genes	Relation type
ENSG00000240045	Chromatin interaction
ENSG00000242790	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1038484	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs10460859	0.89[EUR][1000 genomes]
rs11717066	0.91[EUR][1000 genomes]
rs12485769	0.91[EUR][1000 genomes]
rs13081440	0.87[EUR][1000 genomes]
rs1564854	0.91[EUR][1000 genomes]
rs1872412	0.89[EUR][1000 genomes]
rs1872413	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs2171014	0.91[EUR][1000 genomes]
rs2171015	0.91[EUR][1000 genomes]
rs2200392	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2220187	0.89[EUR][1000 genomes]
rs2314615	0.90[EUR][1000 genomes]
rs2314616	0.91[EUR][1000 genomes]
rs2314617	0.90[EUR][1000 genomes]
rs2314618	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2314619	0.85[CHB][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3796270	0.90[EUR][1000 genomes]
rs3796271	0.90[EUR][1000 genomes]
rs4679742	0.90[EUR][1000 genomes]
rs6773411	0.89[EUR][1000 genomes]
rs6773566	0.89[EUR][1000 genomes]
rs978934	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9823924	0.91[EUR][1000 genomes]
rs9834031	0.91[EUR][1000 genomes]
rs9854587	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv829762	chr3:154879350-155052986	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155000800-155008800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:155001000-155009000	Weak transcription	Psoas Muscle	Psoas
3	chr3:155001000-155009400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:155001400-155009400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:155001600-155009200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:155006000-155010600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:155006200-155006600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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