Variant report

Variant	rs9855222
Chromosome Location	chr3:70326261-70326262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1403083	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1522345	0.85[AFR][1000 genomes]
rs1522346	0.84[AFR][1000 genomes]
rs2320474	0.85[AFR][1000 genomes]
rs34934640	0.87[EUR][1000 genomes]
rs6549324	0.86[AFR][1000 genomes]
rs9310188	0.90[AFR][1000 genomes]
rs9863812	0.90[AFR][1000 genomes]
rs9863818	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv834725	chr3:70199671-70395784	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834726	chr3:70279890-70464242	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv876936	chr3:70304538-70352489	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9855222	UBA3	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70322400-70326600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:70325800-70327000	Enhancers	Fetal Intestine Large	intestine
3	chr3:70325800-70327000	Enhancers	Fetal Lung	lung
4	chr3:70325800-70327400	Enhancers	Fetal Intestine Small	intestine
5	chr3:70326200-70326600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr3:70326200-70326600	Flanking Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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