Variant report

Variant	rs985577
Chromosome Location	chr8:20226928-20226929
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1016646	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10503679	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678670	0.86[EUR][1000 genomes]
rs12680152	0.85[EUR][1000 genomes]
rs17092258	0.87[AMR][1000 genomes]
rs17092305	0.86[EUR][1000 genomes]
rs17412582	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17412623	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17412734	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17412740	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17412929	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17490756	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs17490805	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17490847	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17490895	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17491153	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2086886	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35673104	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4601325	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4921708	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4921711	0.86[EUR][1000 genomes]
rs4921713	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4922159	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4922160	0.82[EUR][1000 genomes]
rs4922161	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4922175	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4922177	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4922178	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4922179	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4922180	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4922182	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4922183	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4922187	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4922189	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55638716	0.82[EUR][1000 genomes]
rs55700547	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55724720	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55968150	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56098307	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56137757	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56157706	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56171374	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6586910	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7011182	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs985578	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv831256	chr8:20162233-20300224	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20226200-20227200	Enhancers	Fetal Brain Male	brain
2	chr8:20226400-20227000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr8:20226400-20227000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:20226400-20227000	Enhancers	Fetal Muscle Leg	muscle
5	chr8:20226400-20227000	Enhancers	HSMM	muscle
6	chr8:20226400-20227200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:20226400-20227200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:20226400-20227200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:20226400-20227200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:20226400-20227200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:20226400-20227200	Enhancers	Fetal Brain Female	brain
12	chr8:20226400-20227200	Enhancers	HSMMtube	muscle
13	chr8:20226600-20227000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr8:20226600-20227000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr8:20226600-20227200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr8:20226600-20227200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:20226600-20227200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr8:20226600-20227200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr8:20226800-20227000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr8:20226800-20227000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links