Variant report

Variant	rs9856362
Chromosome Location	chr3:161113787-161113788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28576033	1.00[AFR][1000 genomes]
rs6775682	1.00[AFR][1000 genomes]
rs9809919	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs9810022	0.83[AFR][1000 genomes]
rs9829610	0.83[AFR][1000 genomes]
rs9843717	1.00[AFR][1000 genomes]
rs9852701	0.83[AFR][1000 genomes]
rs9864219	0.95[AFR][1000 genomes]
rs9868219	0.91[YRI][hapmap];0.95[AFR][1000 genomes]
rs9868527	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161108800-161114400	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr3:161110000-161114600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:161110200-161114400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:161110200-161114600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:161111800-161113800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:161111800-161113800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr3:161112000-161113800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:161112000-161113800	Enhancers	Dnd41	blood
9	chr3:161113000-161114000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr3:161113000-161114600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:161113400-161114000	Enhancers	Primary T cells from cord blood	blood
12	chr3:161113400-161115000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr3:161113600-161118000	Weak transcription	Liver	Liver
14	chr3:161113600-161118000	Weak transcription	HepG2	liver
15	chr3:161113600-161127600	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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