Variant report

Variant	rs9856485
Chromosome Location	chr3:52872691-52872692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:52872677-52872729	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52865265..52868196-chr3:52870244..52872785,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM110-MUSTN1-1	chr3:52872020-52873766	NONHSAT089970

Variant related genes	Relation type
ENSG00000243696	TF binding region
MUSTN1	TF binding region
ENSG00000243696	Chromatin interaction
ENSG00000055955	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834698	chr3:52749983-52928219	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv876797	chr3:52817675-52873984	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv967253	chr3:52871714-52877079	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52854200-52874200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:52854800-52888400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:52856000-52875000	Weak transcription	Fetal Intestine Large	intestine
4	chr3:52862000-52882600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:52864400-52875800	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr3:52865600-52874200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:52865600-52875200	Weak transcription	Dnd41	blood
8	chr3:52865800-52878600	Weak transcription	Small Intestine	intestine
9	chr3:52866000-52884800	Weak transcription	HMEC	breast
10	chr3:52866200-52885200	Weak transcription	NHEK	skin
11	chr3:52866600-52873600	Weak transcription	Hela-S3	cervix
12	chr3:52866600-52879200	Weak transcription	Osteobl	bone
13	chr3:52866800-52876400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr3:52866800-52878200	Strong transcription	Fetal Brain Female	brain
15	chr3:52866800-52879600	Genic enhancers	Fetal Thymus	thymus
16	chr3:52867000-52876400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr3:52867000-52881600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:52867000-52881800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:52867200-52875200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:52868000-52878800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:52868000-52883200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:52868400-52877800	Strong transcription	Brain Germinal Matrix	brain
23	chr3:52868600-52875200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:52868800-52873000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:52868800-52876800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:52869000-52873400	Strong transcription	Brain Anterior Caudate	brain
27	chr3:52869000-52878800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:52869000-52879400	Strong transcription	Fetal Intestine Small	intestine
29	chr3:52869000-52881800	Weak transcription	Fetal Kidney	kidney
30	chr3:52869200-52873000	Strong transcription	Primary B cells from cord blood	blood
31	chr3:52869400-52872800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr3:52869400-52874200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:52869400-52875200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr3:52869400-52875600	Weak transcription	Colonic Mucosa	Colon
35	chr3:52869600-52873000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr3:52869600-52873400	Enhancers	Psoas Muscle	Psoas
37	chr3:52869600-52875000	Strong transcription	Brain Angular Gyrus	brain
38	chr3:52869600-52875200	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr3:52869600-52878600	Weak transcription	NHDF-Ad	bronchial
40	chr3:52869600-52879600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr3:52869600-52881800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr3:52869800-52873200	Weak transcription	HepG2	liver
43	chr3:52869800-52874200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:52869800-52875600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr3:52869800-52876600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr3:52869800-52882000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr3:52869800-52884000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr3:52870000-52873800	Genic enhancers	Fetal Muscle Trunk	muscle
49	chr3:52870000-52874000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr3:52870000-52874400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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