Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156561524..156563963-chr3:156567405..156569165,2	K562	blood:
2	chr3:156557512..156559174-chr3:156562252..156564501,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10936043	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11709901	0.87[ASN][1000 genomes]
rs11712111	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12629380	0.85[ASN][1000 genomes]
rs12638253	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17382070	0.85[ASN][1000 genomes]
rs2060015	0.91[ASN][1000 genomes]
rs2321290	0.88[ASN][1000 genomes]
rs34667021	0.88[ASN][1000 genomes]
rs3910072	0.89[ASN][1000 genomes]
rs4680312	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62275765	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7637701	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7638625	0.89[ASN][1000 genomes]
rs9812895	0.84[ASN][1000 genomes]
rs9837038	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9847187	0.88[ASN][1000 genomes]
rs9865905	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9866373	0.84[ASN][1000 genomes]
rs9867621	0.85[ASN][1000 genomes]
rs9871817	0.85[ASN][1000 genomes]
rs9875688	0.85[EUR][1000 genomes]
rs9876010	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9858158	LINC00886	cis	Skin Sun Exposed Lower leg	GTEx
rs9858158	LINC00886	cis	Stomach	GTEx
rs9858158	LINC00886	cis	Adipose Subcutaneous	GTEx
rs9858158	LINC00886	cis	Artery Tibial	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156561800-156565200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:156561800-156565200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:156561800-156565200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:156561800-156565200	Weak transcription	NHDF-Ad	bronchial

Quick Search: