Variant report

Variant	rs9858423
Chromosome Location	chr5:71089777-71089778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10451871	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10451916	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11926167	0.82[EUR][1000 genomes]
rs12637518	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13081038	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13084070	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1392799	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16827350	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35217153	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4383468	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4632503	0.82[EUR][1000 genomes]
rs4680342	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4680344	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4680346	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6441114	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6441122	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6767619	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6780831	0.82[EUR][1000 genomes]
rs6781991	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6783595	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6789178	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6805114	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6808284	0.82[EUR][1000 genomes]
rs6808457	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6809003	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6809394	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7620178	0.82[EUR][1000 genomes]
rs7636185	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7638194	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7642179	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7647643	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9289978	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9289979	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9827676	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9831830	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9848409	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9861469	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830341	chr5:71057105-71221422	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:71082600-71090000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:71082600-71103000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:71089600-71090000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
4	chr5:71089600-71090800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr5:71089600-71090800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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