Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr3:86318426-86318999	HepG2	liver:	n/a	n/a
2	HNF4A	chr3:86318453-86318906	HepG2	liver:	n/a	n/a
3	FOXA1	chr3:86318389-86319046	HepG2	liver:	n/a	n/a
4	SP1	chr3:86318393-86319005	HepG2	liver:	n/a	n/a
5	EP300	chr3:86318429-86319045	HepG2	liver:	n/a	n/a
6	NFIC	chr3:86318476-86319061	HepG2	liver:	n/a	n/a
7	ARID3A	chr3:86318438-86319020	HepG2	liver:	n/a	n/a
8	HNF4A	chr3:86318477-86318974	HepG2	liver:	n/a	n/a
9	BRCA1	chr3:86318516-86318663	Hela-S3	cervix:	n/a	n/a
10	FOXA1	chr3:86318429-86319091	HepG2	liver:	n/a	n/a
11	EP300	chr3:86318461-86318989	HepG2	liver:	n/a	n/a
12	FOXA1	chr3:86318510-86319027	HepG2	liver:	n/a	n/a
13	MAX	chr3:86318425-86319048	HepG2	liver:	n/a	n/a
14	HNF4G	chr3:86318467-86318905	HepG2	liver:	n/a	n/a
15	TEAD4	chr3:86318455-86318983	HepG2	liver:	n/a	n/a
16	CREB1	chr3:86318407-86318961	HepG2	liver:	n/a	n/a
17	HNF4A	chr3:86318508-86318953	HepG2	liver:	n/a	n/a
18	CEBPB	chr3:86318491-86318829	HepG2	liver:	n/a	n/a
19	HNF4G	chr3:86318513-86318910	HepG2	liver:	n/a	n/a
20	FOXA1	chr3:86318495-86319022	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000239767	TF binding region

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12714653	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17359271	0.88[ASN][1000 genomes]
rs17359695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784243	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6790827	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7610076	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7652002	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9830628	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9848250	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9853706	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs9873208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9877809	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877114	chr3:86257272-86328961	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86318000-86318600	Enhancers	HepG2	liver

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