Variant report

Variant	rs9859621
Chromosome Location	chr3:98684328-98684329
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10511171	0.95[YRI][hapmap]
rs11918944	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13069458	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16840260	0.84[JPT][hapmap]
rs62276869	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7635780	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7638009	0.81[AMR][1000 genomes]
rs9835952	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs996966	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98681400-98684400	Enhancers	NHDF-Ad	bronchial
2	chr3:98681400-98686000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:98681800-98685800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:98682400-98685200	Weak transcription	HUVEC	blood vessel
5	chr3:98682400-98685800	Enhancers	HMEC	breast
6	chr3:98682400-98686000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:98683000-98685600	Enhancers	NHEK	skin
8	chr3:98683000-98686000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:98683200-98684400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:98683400-98685400	Weak transcription	Osteobl	bone
11	chr3:98683400-98687600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:98683600-98684400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:98683800-98684400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:98683800-98685800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:98683800-98690000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:98684000-98685400	Enhancers	A549	lung
17	chr3:98684000-98685400	Weak transcription	NH-A	brain
18	chr3:98684000-98685800	Weak transcription	HSMM	muscle
19	chr3:98684200-98684800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:98684200-98685200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr3:98684200-98685200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:98684200-98685600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:98684200-98686200	Weak transcription	NHLF	lung

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