Variant report

Variant	rs9860546
Chromosome Location	chr3:50298024-50298025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF7	chr3:50297372-50298068	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr3:50297063-50298115	HCT-116	colon:	n/a	chr3:50297246-50297259 chr3:50297571-50297590 chr3:50297576-50297588 chr3:50297576-50297586 chr3:50297475-50297488 chr3:50297574-50297587
3	CTBP2	chr3:50297099-50298836	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr3:50296981-50298815	MCF-7	breast:	n/a	n/a
5	POLR2A	chr3:50297331-50298717	MCF-7	breast:	n/a	n/a
6	CREB1	chr3:50297043-50298189	H1-hESC	embryonic stem cell:	n/a	chr3:50297624-50297637
7	REST	chr3:50297452-50298196	HepG2	liver:	n/a	n/a
8	POLR2A	chr3:50296614-50299162	HUVEC	blood vessel:	n/a	n/a
9	CTCF	chr3:50296922-50298737	SK-N-SH	brain:	n/a	chr3:50297571-50297587 chr3:50297573-50297582 chr3:50297573-50297586 chr3:50297572-50297593 chr3:50297575-50297585 chr3:50297570-50297588 chr3:50297573-50297586
10	ELF1	chr3:50296828-50298653	GM12878	blood:	n/a	chr3:50297564-50297573 chr3:50297584-50297593 chr3:50297644-50297656
11	RXRA	chr3:50297437-50298043	HepG2	liver:	n/a	chr3:50297723-50297730 chr3:50297570-50297590
12	TCF12	chr3:50297917-50298201	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr3:50297612-50298251	HepG2	liver:	n/a	n/a
14	MYBL2	chr3:50297972-50298374	HepG2	liver:	n/a	n/a
15	ELF1	chr3:50297185-50298042	GM12878	blood:	n/a	chr3:50297564-50297573 chr3:50297584-50297593 chr3:50297644-50297656
16	MAX	chr3:50297217-50298361	ECC-1	luminal epithelium:	n/a	chr3:50297503-50297513
17	CTCF	chr3:50297940-50298090	GM12865	blood:	n/a	n/a
18	MAX	chr3:50297316-50298079	SK-N-SH	brain:	n/a	chr3:50297503-50297513
19	POLR2A	chr3:50296420-50298223	HL-60	blood:	n/a	n/a
20	ZBTB7A	chr3:50297379-50298074	K562	blood:	n/a	chr3:50297578-50297587
21	POLR2A	chr3:50297234-50299038	IMR90	lung:	n/a	n/a
22	TEAD4	chr3:50297695-50298169	HepG2	liver:	n/a	n/a
23	ZBTB7A	chr3:50297435-50298566	ECC-1	luminal epithelium:	n/a	chr3:50297578-50297587
24	E2F6	chr3:50297365-50298205	K562	blood:	n/a	chr3:50297505-50297514 chr3:50297478-50297488 chr3:50297484-50297494 chr3:50297627-50297636 chr3:50297625-50297634
25	TAF1	chr3:50297866-50298150	SK-N-SH	brain:	n/a	n/a
26	MAX	chr3:50297969-50298220	NB4	blood:	n/a	n/a
27	POLR2A	chr3:50297856-50298273	H1-hESC	embryonic stem cell:	n/a	n/a
28	ESRRA	chr3:50296969-50298229	GM12878	blood:	n/a	chr3:50297704-50297723 chr3:50297702-50297715
29	UBTF	chr3:50297447-50298069	K562	blood:	n/a	n/a
30	TAF1	chr3:50297392-50298206	H1-hESC	embryonic stem cell:	n/a	n/a
31	E2F6	chr3:50297771-50298138	K562	blood:	n/a	n/a
32	RAD21	chr3:50296915-50298290	SK-N-SH	brain:	n/a	chr3:50297246-50297259 chr3:50297571-50297590 chr3:50297576-50297588 chr3:50297576-50297586 chr3:50297475-50297488 chr3:50297574-50297587
33	POLR2A	chr3:50297235-50299454	HepG2	liver:	n/a	n/a
34	EP300	chr3:50297369-50298240	ECC-1	luminal epithelium:	n/a	chr3:50297572-50297588 chr3:50297579-50297588 chr3:50297582-50297591
35	MYBL2	chr3:50297125-50298525	HepG2	liver:	n/a	n/a
36	ATF2	chr3:50297084-50298469	H1-hESC	embryonic stem cell:	n/a	chr3:50297625-50297636
37	POLR2A	chr3:50296930-50299101	HUVEC	blood vessel:	n/a	n/a
38	CREB1	chr3:50297832-50298079	A549	lung:	n/a	n/a
39	RCOR1	chr3:50297417-50298433	HepG2	liver:	n/a	n/a
40	TCF7L2	chr3:50297435-50298272	Hela-S3	cervix:	n/a	chr3:50297851-50297865
41	RAD21	chr3:50297353-50298118	HepG2	liver:	n/a	chr3:50297571-50297590 chr3:50297576-50297588 chr3:50297576-50297586 chr3:50297475-50297488 chr3:50297574-50297587
42	SIN3AK20	chr3:50297763-50298068	HepG2	liver:	n/a	n/a
43	POLR2A	chr3:50297488-50298125	MCF10A-Er-Src	breast:	n/a	n/a
44	MYC	chr3:50297264-50298064	NB4	blood:	n/a	chr3:50297503-50297513
45	CTCF	chr3:50297880-50298030	GM12866	blood:	n/a	n/a
46	TBP	chr3:50297560-50298305	HepG2	liver:	n/a	n/a
47	POLR2A	chr3:50296774-50298481	PFSK-1	brain:	n/a	n/a
48	POLR2A	chr3:50297011-50298710	H1-neurons	neurons:	n/a	n/a
49	HMGN3	chr3:50297307-50298084	K562	blood:	n/a	n/a
50	BCL3	chr3:50297289-50298042	GM12878	blood:	n/a	chr3:50297575-50297588 chr3:50297583-50297592 chr3:50297564-50297577

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:50298001-50298051	IMR90	lung:	fetal
2	chr3:50298001-50298051	Hepatocyte	liver:	n/a
3	chr3:50298001-50298051	GM06990	blood:	n/a
4	chr3:50298001-50298051	ovcar-3	ovarian:	n/a
5	chr3:50298001-50298051	HRE	kidney:	n/a
6	chr3:50298001-50298051	NH-A	brain:	n/a
7	chr3:50298001-50298051	PrEC	prostate:	n/a
8	chr3:50298001-50298051	HCPEpiC	choroid plexus:	n/a
9	chr3:50298001-50298051	HRPEpiC	eye:	n/a
10	chr3:50298001-50298051	HAEpiC	amniotic membrane:	n/a
11	chr3:50298001-50298051	GM12878	blood:	n/a
12	chr3:50298001-50298051	AoSMC	blood vessel:	n/a
13	chr3:50298001-50298051	HUVEC	blood vessel:	n/a
14	chr3:50298001-50298051	H1-hESC	embryonic stem cell:	embryo
15	chr3:50298001-50298051	K562	blood:	n/a
16	chr3:50298001-50298051	BJ	skin:	n/a
17	chr3:50298001-50298051	T-47D	breast:	n/a
18	chr3:50298001-50298051	GM12891	blood:	n/a
19	chr3:50298001-50298051	U87	brain:	n/a
20	chr3:50298001-50298051	HEK293	kidney:	embryo
21	chr3:50298001-50298051	AG09319	gingival:	n/a
22	chr3:50298001-50298051	HL-60	blood:	n/a
23	chr3:50298001-50298051	AG10803	skin:	n/a
24	chr3:50298001-50298051	HCM	heart:	n/a
25	chr3:50298001-50298051	SK-N-SH_RA	brain:	n/a
26	chr3:50298001-50298051	MCF-7	breast:	n/a
27	chr3:50298001-50298051	RPTEC	kidney:	n/a
28	chr3:50298001-50298051	Jurkat	blood:	n/a
29	chr3:50298001-50298051	HEEpiC	esophagus:	n/a
30	chr3:50298001-50298051	CMK	blood:	n/a
31	chr3:50298001-50298051	AG04449	skin:	fetal
32	chr3:50298001-50298051	SAEC	small airway:	n/a
33	chr3:50298001-50298051	SK-N-SH	brain:	n/a
34	chr3:50298001-50298051	A549	lung:	n/a
35	chr3:50298001-50298051	Hela-S3	cervix:	n/a
36	chr3:50298001-50298051	HCF	heart:	n/a
37	chr3:50298001-50298051	GM19239	blood:	n/a
38	chr3:50298001-50298051	SKMC	muscle:	n/a
39	chr3:50298001-50298051	GM12892	blood:	n/a
40	chr3:50298001-50298051	NT2-D1	testis:	n/a
41	chr3:50298001-50298051	HepG2	liver:	n/a
42	chr3:50298001-50298051	HPAEpiC	pulmonary alveolar:	n/a
43	chr3:50298001-50298051	NB4	blood:	n/a
44	chr3:50298001-50298051	SK-N-MC	brain:	n/a
45	chr3:50298001-50298051	NHDF-neo	bronchial:	n/a
46	chr3:50298001-50298051	NHBE	bronchial:	n/a
47	chr3:50298001-50298051	ECC-1	luminal epithelium:	n/a
48	chr3:50298001-50298051	HCT-116	colon:	n/a
49	chr3:50298001-50298051	BE2_C	brain:	n/a
50	chr3:50298001-50298051	PANC-1	pancreas:	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:50262911..50267533-chr3:50295894..50298944,5	MCF-7	breast:
2	chr3:50295925..50299690-chr3:50335868..50338319,4	K562	blood:
3	chr3:50296610..50299539-chr3:50310066..50312117,3	K562	blood:
4	chr3:50228755..50230527-chr3:50297568..50299197,2	MCF-7	breast:
5	chr3:50296091..50300659-chr3:50356103..50362246,11	MCF-7	breast:
6	chr3:50266710..50270196-chr3:50295064..50299749,5	K562	blood:
7	chr3:50229933..50231783-chr3:50296964..50298649,2	K562	blood:
8	chr3:50297731..50299690-chr3:50335668..50338319,3	K562	blood:
9	chr3:50297136..50298055-chr3:50311497..50312548,4	MCF-7	breast:
10	chr3:50296030..50318456-chr3:50318822..50339499,66	MCF-7	breast:
11	chr3:50283458..50285462-chr3:50296982..50299198,2	K562	blood:
12	chr3:50275833..50279919-chr3:50292841..50298987,5	MCF-7	breast:
13	chr3:50295790..50299500-chr3:50356173..50362991,11	MCF-7	breast:
14	chr3:50264047..50265406-chr3:50297136..50298172,6	K562	blood:
15	chr3:50297097..50298047-chr3:50310088..50310992,4	MCF-7	breast:
16	chr3:50295514..50298140-chr3:50364453..50366919,2	K562	blood:
17	chr3:50263539..50265504-chr3:50297287..50299531,3	K562	blood:
18	chr3:50288085..50289817-chr3:50297461..50299004,2	K562	blood:
19	chr3:50272452..50275619-chr3:50295837..50299163,4	MCF-7	breast:
20	chr3:50263231..50266292-chr3:50296213..50298678,3	MCF-7	breast:
21	chr3:50290143..50293966-chr3:50294360..50298503,5	K562	blood:
22	chr3:50291997..50295519-chr3:50296180..50299303,4	MCF-7	breast:
23	chr3:50292125..50293966-chr3:50295138..50298503,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HYAL3-1	chr3:50297829-50300713	ENSG00000250212
2	lnc-GNAI2-1	chr3:50297735-50299967	ENSG00000230454
3	lnc-GNAI2-1	chr3:50297735-50299967	NONHSAT089806

Variant related genes	Relation type
ENSG00000230454	TF binding region
ENSG00000230454	CpG island
ENSG00000114383	Chromatin interaction
ENSG00000068001	Chromatin interaction
ENSG00000186792	Chromatin interaction
ENSG00000012171	Chromatin interaction
ENSG00000214706	Chromatin interaction
ENSG00000243477	Chromatin interaction
ENSG00000114353	Chromatin interaction
ENSG00000213600	Chromatin interaction
ENSG00000114349	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12330297	0.87[AFR][1000 genomes]
rs13316958	1.00[AFR][1000 genomes]
rs13321551	1.00[AFR][1000 genomes]
rs13323932	1.00[AFR][1000 genomes]
rs13324545	0.87[AFR][1000 genomes]
rs13327678	1.00[AFR][1000 genomes]
rs9811223	1.00[AFR][1000 genomes]
rs9820116	1.00[AFR][1000 genomes]
rs9825506	1.00[AFR][1000 genomes]
rs9828683	0.87[AFR][1000 genomes]
rs9829573	1.00[AFR][1000 genomes]
rs9835838	1.00[AFR][1000 genomes]
rs9849605	0.87[AFR][1000 genomes]
rs9850145	1.00[AFR][1000 genomes]
rs9864231	0.87[AFR][1000 genomes]
rs9866016	0.87[AFR][1000 genomes]
rs9875449	0.89[AFR][1000 genomes]
rs9883977	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001775	chr3:50129479-50311666	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv523662	chr3:50144951-50584999	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv1013949	chr3:50151712-50339163	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv590250	chr3:50153356-50332697	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv876769	chr3:50155468-50408398	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
6	esv1821728	chr3:50156142-50657253	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
7	esv1793751	chr3:50157364-50476363	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
8	esv1828162	chr3:50157364-50506151	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
9	nsv590251	chr3:50158774-50337422	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
10	nsv470561	chr3:50158774-50584999	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
11	nsv876770	chr3:50158774-50609624	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
12	nsv523560	chr3:50172397-50339163	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
13	nsv460529	chr3:50178011-50324672	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
14	nsv460530	chr3:50178011-50324672	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
15	nsv590252	chr3:50178011-50324672	Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
16	nsv1002916	chr3:50187646-50311666	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
17	nsv536564	chr3:50187646-50311666	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
18	nsv1014256	chr3:50187646-50339163	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
19	nsv536565	chr3:50187646-50339163	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
20	nsv1001993	chr3:50187646-50640808	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
21	nsv590253	chr3:50196418-50337422	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
22	esv2757870	chr3:50198478-50371377	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
23	esv2759148	chr3:50198478-50371377	Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
24	nsv834692	chr3:50198485-50393464	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
25	nsv590254	chr3:50243510-50388607	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
26	nsv460531	chr3:50247824-50436827	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
27	nsv590255	chr3:50247824-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
28	nsv876772	chr3:50255305-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50284800-50300600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:50295800-50298600	Weak transcription	Fetal Kidney	kidney
3	chr3:50295800-50298600	Genic enhancers	Spleen	Spleen
4	chr3:50296800-50299000	Enhancers	Stomach Mucosa	stomach
5	chr3:50297000-50298400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:50297000-50298400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:50297000-50298400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr3:50297000-50299200	Flanking Active TSS	Fetal Muscle Trunk	muscle
9	chr3:50297000-50299200	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr3:50297200-50298200	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr3:50297200-50298200	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr3:50297200-50298200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr3:50297200-50298400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:50297200-50298400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr3:50297200-50298600	Flanking Active TSS	Dnd41	blood
16	chr3:50297200-50298600	Transcr. at gene 5' and 3'	NHLF	lung
17	chr3:50297200-50298800	Flanking Active TSS	Colonic Mucosa	Colon
18	chr3:50297200-50298800	Flanking Active TSS	HSMM	muscle
19	chr3:50297200-50299000	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr3:50297400-50298200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:50297400-50298200	Active TSS	Thymus	Thymus
22	chr3:50297400-50298200	Active TSS	HepG2	liver
23	chr3:50297400-50298400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:50297400-50298400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:50297400-50298400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr3:50297400-50298400	Active TSS	Colon Smooth Muscle	Colon
27	chr3:50297400-50298600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr3:50297600-50298200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:50297600-50298200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:50297600-50298200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr3:50297600-50298200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
32	chr3:50297600-50298200	Active TSS	Aorta	Aorta
33	chr3:50297600-50298200	Active TSS	Ovary	ovary
34	chr3:50297600-50298200	Active TSS	Right Ventricle	heart
35	chr3:50297600-50298200	Active TSS	Small Intestine	intestine
36	chr3:50297600-50298200	Flanking Active TSS	HMEC	breast
37	chr3:50297600-50298400	Active TSS	H9 Cell Line	embryonic stem cell
38	chr3:50297600-50298400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:50297600-50298400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr3:50297600-50298400	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr3:50297600-50298400	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr3:50297600-50298400	Flanking Active TSS	NHEK	skin
43	chr3:50297600-50298600	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr3:50297600-50298600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr3:50297600-50298600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr3:50297600-50298600	Flanking Active TSS	Fetal Intestine Small	intestine
47	chr3:50297600-50298800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:50297600-50298800	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
49	chr3:50297600-50299200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:50297800-50298200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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