Variant report

Variant	rs9860640
Chromosome Location	chr3:61078645-61078646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13326701	1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60099223	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6765664	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6775705	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73839930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311795	0.89[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9813137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9820462	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs9826449	0.84[AFR][1000 genomes]
rs9831324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9836068	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845837	0.86[LWK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876864	chr3:60952040-61103609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv915904	chr3:60952040-61125194	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1012510	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536578	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv948633	chr3:60993915-61171279	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv834710	chr3:60995631-61148157	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2757873	chr3:61019003-61185558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv876866	chr3:61054494-61310328	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv2756993	chr3:61064432-61119923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61067400-61079200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:61078600-61079000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:61078600-61079000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:61078600-61079200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:61078600-61079200	Enhancers	Fetal Brain Male	brain
6	chr3:61078600-61079200	Enhancers	Fetal Lung	lung
7	chr3:61078600-61079200	Enhancers	Fetal Stomach	stomach
8	chr3:61078600-61079400	Enhancers	Ovary	ovary
9	chr3:61078600-61079600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:61078600-61079600	Enhancers	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links