Variant report

Variant	rs9862232
Chromosome Location	chr3:56159214-56159215
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1519027	1.00[AFR][1000 genomes]
rs547732	1.00[AFR][1000 genomes]
rs689919	0.80[EUR][1000 genomes]
rs690223	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56154400-56159400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:56154400-56159400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:56154600-56159400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:56155000-56159400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:56155600-56160000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:56155800-56160000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:56155800-56160000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:56155800-56160000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:56156400-56160000	Enhancers	HSMM	muscle
10	chr3:56156600-56160000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:56156600-56160200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr3:56156800-56159400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:56157200-56160000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:56157400-56159600	Weak transcription	HSMMtube	muscle
15	chr3:56157400-56166200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:56157600-56159400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:56157800-56160000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr3:56157800-56175400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:56158000-56159400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:56158000-56160000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr3:56158200-56159600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:56158200-56159800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr3:56158400-56159400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:56158400-56160000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr3:56158400-56160000	Enhancers	NHDF-Ad	bronchial
26	chr3:56158600-56160200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr3:56158800-56159600	Enhancers	Fetal Kidney	kidney
28	chr3:56158800-56160000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:56158800-56160000	Enhancers	HUVEC	blood vessel
30	chr3:56158800-56164600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr3:56159000-56160000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:56159000-56160000	Enhancers	A549	lung
33	chr3:56159000-56166200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr3:56159200-56159800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:56159200-56159800	Enhancers	HMEC	breast
36	chr3:56159200-56160000	Enhancers	Osteobl	bone
37	chr3:56159200-56160200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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