Variant report

Variant	rs9862554
Chromosome Location	chr3:155849212-155849213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1352404	0.85[EUR][1000 genomes]
rs4680238	0.85[CEU][hapmap]
rs9869649	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155838800-155850200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:155848400-155850200	Enhancers	Adipose Nuclei	Adipose
3	chr3:155848600-155850400	Enhancers	Aorta	Aorta
4	chr3:155848600-155850400	Enhancers	Fetal Muscle Leg	muscle
5	chr3:155848600-155850400	Enhancers	Ovary	ovary
6	chr3:155848800-155850000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:155848800-155851000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:155849200-155850400	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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