Variant report

Variant	rs9863396
Chromosome Location	chr3:81570832-81570833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:104359580..104360355-chr3:81570763..81571263,2	NB4	blood:

Variant related genes	Relation type
ENSG00000139372	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10440071	0.93[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13313972	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13316326	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13323669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13324454	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2372907	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772911	0.80[CEU][hapmap];0.84[CHD][hapmap];0.88[MEX][hapmap]
rs62265412	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62265415	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62265416	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62265423	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62265427	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62265449	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6777831	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7622930	0.93[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7623056	0.80[CEU][hapmap];0.92[CHD][hapmap];0.88[MEX][hapmap]
rs7627081	0.93[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9820295	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9821673	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9833112	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9833541	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9847606	0.84[CHD][hapmap];0.88[MEX][hapmap];0.87[MKK][hapmap]
rs9849214	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9859374	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9861355	0.93[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9862299	0.86[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9866225	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870056	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9871474	0.80[CEU][hapmap];0.92[CHD][hapmap];0.88[MEX][hapmap]
rs9874943	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9881516	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1012133	chr3:81499082-81817471	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv933259	chr3:81523854-81730617	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv999587	chr3:81534364-81707800	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv536603	chr3:81534364-81707800	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81535400-81579400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:81535600-81579400	Weak transcription	HUVEC	blood vessel
3	chr3:81540400-81579600	Weak transcription	Right Ventricle	heart
4	chr3:81541800-81579600	Weak transcription	Ovary	ovary
5	chr3:81546400-81581000	Weak transcription	NHLF	lung
6	chr3:81546600-81578000	Weak transcription	HSMM	muscle
7	chr3:81547400-81579800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:81548200-81579400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr3:81548600-81580400	Weak transcription	Psoas Muscle	Psoas
10	chr3:81550000-81579600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:81553400-81579800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:81556200-81579000	Weak transcription	Primary B cells from cord blood	blood
13	chr3:81557400-81577600	Weak transcription	Liver	Liver
14	chr3:81558000-81577600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr3:81563200-81571000	Weak transcription	Fetal Heart	heart
16	chr3:81565600-81579800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr3:81566000-81571000	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:81566000-81573800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:81566800-81577600	Weak transcription	Adipose Nuclei	Adipose
20	chr3:81568400-81572200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:81568600-81577400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr3:81568600-81577600	Weak transcription	NHDF-Ad	bronchial
23	chr3:81568800-81580200	Weak transcription	Osteobl	bone
24	chr3:81569000-81577600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:81569000-81580000	Weak transcription	Spleen	Spleen
26	chr3:81569000-81583800	Weak transcription	Gastric	stomach
27	chr3:81569200-81571400	Strong transcription	Dnd41	blood
28	chr3:81569200-81582400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr3:81569400-81577000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:81569800-81571400	Strong transcription	Left Ventricle	heart
31	chr3:81570000-81571800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr3:81570400-81573200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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