Variant report

Variant	rs9863451
Chromosome Location	chr3:19388116-19388117
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12330435	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12485979	0.88[ASN][1000 genomes]
rs13316471	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13320076	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2034008	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4420896	0.81[ASN][1000 genomes]
rs4626116	0.85[ASN][1000 genomes]
rs56162112	0.90[ASN][1000 genomes]
rs7615243	0.90[ASN][1000 genomes]
rs7640623	0.88[ASN][1000 genomes]
rs9811681	0.81[ASN][1000 genomes]
rs9873680	0.90[ASN][1000 genomes]
rs9879169	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517847	chr3:18845347-19483695	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010123	chr3:18990307-19989504	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1004602	chr3:19031671-19930052	Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv536511	chr3:19031671-19930052	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv948636	chr3:19335802-19856585	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:19378400-19392400	Weak transcription	Brain Germinal Matrix	brain
2	chr3:19382800-19391600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:19385800-19388200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:19386400-19388200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:19386600-19388600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:19386800-19389600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:19387000-19388200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:19387600-19389200	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:19387800-19388400	Enhancers	GM12878-XiMat	blood
10	chr3:19387800-19388600	Enhancers	Brain Angular Gyrus	brain
11	chr3:19388000-19388600	Enhancers	Primary B cells from cord blood	blood
12	chr3:19388000-19388600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr3:19388000-19388800	Enhancers	Brain Anterior Caudate	brain
14	chr3:19388000-19389600	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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