Variant report

Variant	rs9864555
Chromosome Location	chr3:179955193-179955194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10222466	0.83[EUR][1000 genomes]
rs10937021	0.80[EUR][1000 genomes]
rs13322790	0.85[EUR][1000 genomes]
rs1357904	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1464844	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1525269	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1525272	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1525276	0.86[EUR][1000 genomes]
rs1581549	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1589858	0.87[EUR][1000 genomes]
rs16831259	0.80[ASN][1000 genomes]
rs16831288	0.85[EUR][1000 genomes]
rs1852123	0.86[EUR][1000 genomes]
rs2091273	0.86[EUR][1000 genomes]
rs2222858	0.82[ASN][1000 genomes]
rs3906013	0.86[EUR][1000 genomes]
rs3906014	0.86[EUR][1000 genomes]
rs4109306	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4343625	0.80[ASN][1000 genomes]
rs4854964	0.85[EUR][1000 genomes]
rs62292288	0.80[ASN][1000 genomes]
rs6790465	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7619775	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7622125	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7652322	0.85[EUR][1000 genomes]
rs9290697	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9812621	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9819178	0.86[EUR][1000 genomes]
rs9840477	0.83[EUR][1000 genomes]
rs9840775	0.82[EUR][1000 genomes]
rs9845934	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9860526	0.83[EUR][1000 genomes]
rs9862989	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9868908	0.87[EUR][1000 genomes]
rs9869517	0.83[EUR][1000 genomes]
rs9871936	0.85[EUR][1000 genomes]
rs9877454	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179953800-179967200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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