Variant report

Variant	rs9866364
Chromosome Location	chr3:79157354-79157355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1563383	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap]
rs983513	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs9856034	0.90[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834745	chr3:79055426-79227937	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79152800-79157600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:79154000-79160800	Weak transcription	Fetal Kidney	kidney
3	chr3:79157200-79158000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:79157200-79158200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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