Variant report

Variant	rs986740
Chromosome Location	chr3:48395397-48395398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12630599	0.95[EUR][1000 genomes]
rs13062576	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1380260	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1459243	0.95[EUR][1000 genomes]
rs1459244	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1459245	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1459247	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17080119	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1870441	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34138269	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34537842	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34857497	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4858813	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4858814	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs876597	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs986739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs986741	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs986742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834683	chr3:48301504-48493261	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv834684	chr3:48385699-48589323	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48393800-48396800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:48393800-48397000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links