Variant report

Variant	rs9867585
Chromosome Location	chr3:67697625-67697626
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:67692723..67696784-chr3:67696803..67701487,5	K562	blood:
2	chr3:67693746..67699726-chr3:67701571..67705130,8	K562	blood:
3	chr3:67693669..67696019-chr3:67696200..67698241,3	MCF-7	breast:
4	chr3:67686748..67688794-chr3:67696396..67698121,2	MCF-7	breast:
5	chr3:67693692..67697649-chr3:67698032..67705100,9	K562	blood:
6	chr3:67687185..67689279-chr3:67695824..67697834,2	K562	blood:
7	chr3:67696995..67702204-chr3:67702925..67706326,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172340	Chromatin interaction
ENSG00000241316	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13319718	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13327007	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57485648	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv460700	chr3:67393629-67712970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv590560	chr3:67393629-67712970	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv876922	chr3:67635506-67755257	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv428739	chr3:67656829-67730379	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67631400-67700200	Weak transcription	K562	blood
2	chr3:67661200-67704000	Weak transcription	Fetal Kidney	kidney
3	chr3:67661400-67699400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:67661400-67700000	Weak transcription	Ovary	ovary
5	chr3:67661400-67701000	Weak transcription	Fetal Lung	lung
6	chr3:67661400-67704000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:67661600-67703600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:67668400-67699600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:67670200-67703400	Weak transcription	Aorta	Aorta
10	chr3:67670600-67699000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:67670800-67703200	Weak transcription	Adipose Nuclei	Adipose
12	chr3:67671000-67700600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:67671800-67697800	Weak transcription	Dnd41	blood
14	chr3:67673800-67703400	Weak transcription	Fetal Thymus	thymus
15	chr3:67674000-67704000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:67681400-67703600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:67681800-67698800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:67681800-67704200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:67686200-67698200	Weak transcription	Right Ventricle	heart
20	chr3:67686600-67703600	Weak transcription	Fetal Heart	heart
21	chr3:67686600-67704000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr3:67686800-67698600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:67686800-67703400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr3:67686800-67703400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:67687800-67703400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:67688000-67703400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr3:67689400-67700600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:67689600-67704000	Weak transcription	Thymus	Thymus
29	chr3:67690800-67700200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:67691600-67697800	Weak transcription	Placenta	Placenta
31	chr3:67691800-67700800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:67692200-67699200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr3:67692200-67699600	Weak transcription	Colon Smooth Muscle	Colon
34	chr3:67692800-67699800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:67693200-67697800	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr3:67693400-67700000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr3:67693400-67703400	Weak transcription	Brain Substantia Nigra	brain
38	chr3:67693600-67698400	Strong transcription	Primary B cells from cord blood	blood
39	chr3:67694200-67700200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr3:67694400-67697800	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr3:67695800-67703600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr3:67695800-67704000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr3:67696200-67698200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr3:67696400-67698200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr3:67696600-67698000	Strong transcription	Fetal Stomach	stomach
46	chr3:67696600-67698400	Strong transcription	Fetal Muscle Leg	muscle
47	chr3:67696600-67698400	Enhancers	Spleen	Spleen
48	chr3:67696600-67701800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr3:67696800-67702400	Enhancers	Fetal Intestine Large	intestine
50	chr3:67697000-67698400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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