Variant report

Variant	rs9867593
Chromosome Location	chr3:68810289-68810290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11920714	1.00[ASN][1000 genomes]
rs11920741	1.00[ASN][1000 genomes]
rs1352638	1.00[ASN][1000 genomes]
rs1387731	1.00[ASN][1000 genomes]
rs1489995	1.00[ASN][1000 genomes]
rs1580569	1.00[ASN][1000 genomes]
rs1602199	0.87[ASN][1000 genomes]
rs1602200	1.00[ASN][1000 genomes]
rs1873263	1.00[ASN][1000 genomes]
rs2130436	1.00[ASN][1000 genomes]
rs2314317	1.00[ASN][1000 genomes]
rs4484195	1.00[ASN][1000 genomes]
rs4855521	1.00[ASN][1000 genomes]
rs6549146	1.00[ASN][1000 genomes]
rs6549147	1.00[ASN][1000 genomes]
rs71312526	0.94[EUR][1000 genomes]
rs7621668	1.00[ASN][1000 genomes]
rs7635448	1.00[ASN][1000 genomes]
rs876535	1.00[ASN][1000 genomes]
rs9812027	1.00[ASN][1000 genomes]
rs9846042	1.00[ASN][1000 genomes]
rs9850804	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs991807	1.00[ASN][1000 genomes]
rs991808	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68807800-68811000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:68808000-68810800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:68808200-68811200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:68808400-68813200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:68808800-68813200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:68809000-68811000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:68809200-68813200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:68809200-68813600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:68809600-68811000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:68810200-68813200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:68810200-68824400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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