Variant report

Variant	rs9867835
Chromosome Location	chr3:156820489-156820490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156807801..156810830-chr3:156820273..156823963,3	K562	blood:
2	chr3:156805652..156808665-chr3:156819577..156821397,3	MCF-7	breast:
3	chr3:156820330..156823175-chr3:156828764..156831277,2	K562	blood:
4	chr3:156819619..156821242-chr3:156829822..156831787,2	K562	blood:
5	chr3:156818057..156820688-chr3:156823276..156825045,2	MCF-7	breast:
6	chr3:156819177..156820973-chr3:156821393..156823022,2	MCF-7	breast:
7	chr3:156818183..156821889-chr3:156836594..156840087,4	K562	blood:
8	chr3:156813189..156821079-chr3:156821537..156824673,9	K562	blood:
9	chr3:156820447..156822637-chr3:156825725..156827377,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000241135	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11928575	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2321535	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9840556	0.94[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap]
rs9860743	0.94[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156807800-156822000	Weak transcription	Aorta	Aorta
2	chr3:156808600-156821600	Weak transcription	Small Intestine	intestine
3	chr3:156810600-156832000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:156811000-156823000	Weak transcription	Spleen	Spleen
5	chr3:156811800-156821000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:156813200-156838000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:156815200-156821200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:156816400-156821200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:156817200-156821200	Weak transcription	NHDF-Ad	bronchial
10	chr3:156817400-156821200	Weak transcription	HSMMtube	muscle
11	chr3:156817600-156821200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:156817600-156821200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:156817600-156821400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:156817800-156821200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:156817800-156821800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:156817800-156825600	Weak transcription	Colonic Mucosa	Colon
17	chr3:156817800-156828600	Weak transcription	Pancreas	Pancrea
18	chr3:156818000-156821000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:156818000-156821800	Weak transcription	Esophagus	oesophagus
20	chr3:156818200-156821000	Weak transcription	Ovary	ovary
21	chr3:156818200-156821200	Weak transcription	Brain Anterior Caudate	brain
22	chr3:156818200-156821800	Weak transcription	HMEC	breast
23	chr3:156818200-156821800	Weak transcription	NHEK	skin
24	chr3:156818200-156822000	Weak transcription	HSMM	muscle
25	chr3:156818600-156821000	Weak transcription	Right Atrium	heart
26	chr3:156818600-156821600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:156818600-156822000	Weak transcription	NHLF	lung
28	chr3:156818600-156828800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr3:156819000-156821200	Weak transcription	Colon Smooth Muscle	Colon
30	chr3:156819000-156825400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr3:156819200-156821000	Weak transcription	Left Ventricle	heart
32	chr3:156819200-156821200	Weak transcription	Primary B cells from cord blood	blood
33	chr3:156819200-156821400	Weak transcription	Fetal Intestine Small	intestine
34	chr3:156819200-156821800	Weak transcription	Fetal Intestine Large	intestine
35	chr3:156819200-156821800	Weak transcription	Fetal Muscle Leg	muscle
36	chr3:156819200-156821800	Weak transcription	Right Ventricle	heart
37	chr3:156819200-156822400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr3:156819200-156827600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:156819400-156821000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:156819400-156821000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr3:156819400-156821200	Weak transcription	Fetal Thymus	thymus
42	chr3:156819400-156821400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:156819400-156821400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr3:156819600-156821000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:156819600-156821000	Weak transcription	K562	blood
46	chr3:156819600-156821400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:156819600-156821800	Weak transcription	Fetal Stomach	stomach
48	chr3:156819600-156846400	Weak transcription	Fetal Kidney	kidney
49	chr3:156819800-156821000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:156819800-156821000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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