Variant report

Variant	rs9869941
Chromosome Location	chr3:93850739-93850740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:93846656..93848871-chr3:93849407..93851591,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11927165	0.81[ASN][1000 genomes]
rs13094371	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13095871	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2054081	1.00[EUR][1000 genomes]
rs28372461	1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs28479320	0.81[ASN][1000 genomes]
rs6765330	1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs7615950	1.00[CHD][hapmap]
rs7644176	1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs9810986	0.81[ASN][1000 genomes]
rs9860824	0.93[EUR][1000 genomes]
rs9867629	1.00[EUR][1000 genomes]
rs9879796	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869241	chr3:93527675-94504491	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv998173	chr3:93575084-94427403	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv536644	chr3:93575084-94427403	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1008711	chr3:93575284-94427264	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv536646	chr3:93575284-94427264	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv491829	chr3:93575285-94427263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	esv2755326	chr3:93605126-93882750	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	n/a
8	nsv1013107	chr3:93654100-94102212	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv536648	chr3:93654100-94102212	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv1004176	chr3:93654100-94502551	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	nsv877162	chr3:93779664-94278078	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv877163	chr3:93795972-94047775	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:93783200-93851600	Weak transcription	HMEC	breast
2	chr3:93796000-93857800	Weak transcription	Fetal Brain Male	brain
3	chr3:93799000-93851600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:93800200-93851000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:93802600-93851800	Weak transcription	Small Intestine	intestine
6	chr3:93812400-93852200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:93814800-93857800	Weak transcription	Pancreas	Pancrea
8	chr3:93823600-93857600	Weak transcription	Fetal Brain Female	brain
9	chr3:93826400-93851800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:93826800-93851400	Weak transcription	Hela-S3	cervix
11	chr3:93828800-93856000	Weak transcription	HSMM	muscle
12	chr3:93831600-93851000	Weak transcription	Fetal Kidney	kidney
13	chr3:93831600-93851600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:93831600-93856000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:93831600-93856200	Weak transcription	Ovary	ovary
16	chr3:93831800-93851200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:93833200-93851600	Weak transcription	NHEK	skin
18	chr3:93833200-93852000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:93840000-93851600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr3:93842600-93851800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr3:93843600-93851000	Weak transcription	Aorta	Aorta
22	chr3:93844400-93850800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:93845400-93851000	Weak transcription	Fetal Intestine Small	intestine
24	chr3:93845400-93856200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr3:93845800-93851800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr3:93846000-93851600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr3:93846400-93856200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:93848000-93851000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr3:93848200-93851400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:93848400-93850800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:93848400-93850800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr3:93848400-93851000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:93848400-93856200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:93849400-93852400	Weak transcription	Primary T cells from cord blood	blood
35	chr3:93849600-93851200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr3:93849800-93853600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:93850600-93851000	Enhancers	Brain Anterior Caudate	brain

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