Variant report

Variant	rs9870639
Chromosome Location	chr3:60876104-60876105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10048949	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13067776	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13075102	0.85[EUR][1000 genomes]
rs1447913	0.98[EUR][1000 genomes]
rs1447914	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34412028	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34686536	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34700535	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35744933	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67192280	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67231683	0.85[EUR][1000 genomes]
rs6769544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6772360	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6772719	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6772800	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6780515	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6783370	0.96[EUR][1000 genomes]
rs6785030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6785032	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6785095	0.93[EUR][1000 genomes]
rs6787793	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6787911	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6788110	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6791272	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6793385	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6793580	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6796455	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6803394	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6804167	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73097803	0.94[EUR][1000 genomes]
rs7622729	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7627303	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7636351	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7643970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7644380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7646851	0.86[EUR][1000 genomes]
rs7649286	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9754605	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9755687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9758127	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9827591	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9834435	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9849318	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9849474	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9849492	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9869424	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9870642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9870929	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60872600-60879600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:60876000-60876200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:60876000-60876200	Enhancers	Pancreas	Pancrea

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