Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10470303	0.92[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs11710738	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11711582	0.83[CEU][hapmap]
rs12330761	0.84[CEU][hapmap]
rs2137595	0.83[CEU][hapmap]
rs4413291	0.83[CEU][hapmap]
rs4682299	0.87[CEU][hapmap]
rs4682303	0.84[CEU][hapmap]
rs4682305	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4682312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4682314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6784753	0.87[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs6786292	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6786612	0.92[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6788543	0.83[CEU][hapmap]
rs6796087	0.83[CEU][hapmap]
rs7609653	0.80[AFR][1000 genomes]
rs7649732	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9818574	0.92[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9823974	0.92[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9868909	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111487800-111521000	Weak transcription	Gastric	stomach
2	chr3:111488000-111501400	Weak transcription	Psoas Muscle	Psoas
3	chr3:111488400-111496800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:111489400-111500600	Weak transcription	Fetal Lung	lung
5	chr3:111493000-111496000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:111493400-111500800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:111494000-111497000	Enhancers	Liver	Liver
8	chr3:111494200-111497800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:111494800-111495800	Enhancers	HMEC	breast
10	chr3:111494800-111496000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:111495000-111495800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:111495000-111496000	Enhancers	NHEK	skin
13	chr3:111495200-111495800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:111495200-111497400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:111495200-111500200	Weak transcription	Stomach Mucosa	stomach
16	chr3:111495400-111496000	Enhancers	Fetal Intestine Small	intestine
17	chr3:111495400-111496400	Enhancers	Fetal Intestine Large	intestine
18	chr3:111495400-111497200	Enhancers	Pancreatic Islets	Pancreatic Islet

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