Variant report

Variant	rs9870843
Chromosome Location	chr3:141427440-141427441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141425671..141427483-chr3:141436291..141438702,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73870321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv34073	chr3:141395818-141448774	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv877552	chr3:141420562-141466147	Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141416400-141429800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:141425400-141427800	Enhancers	Lung	lung
3	chr3:141425400-141433000	Enhancers	HUVEC	blood vessel
4	chr3:141425800-141427600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:141426000-141427600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:141426000-141427600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:141426200-141427600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:141426200-141427600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:141426200-141427600	Enhancers	HSMMtube	muscle
10	chr3:141426200-141427600	Enhancers	NHDF-Ad	bronchial
11	chr3:141426200-141431800	Enhancers	Placenta	Placenta
12	chr3:141426400-141427600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr3:141426400-141427600	Enhancers	NH-A	brain
14	chr3:141426600-141427600	Enhancers	Fetal Kidney	kidney
15	chr3:141426800-141427600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr3:141427000-141427600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:141427000-141427600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr3:141427000-141429600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:141427200-141427600	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr3:141427200-141427600	Enhancers	Primary B cells from cord blood	blood
21	chr3:141427200-141429600	Weak transcription	HMEC	breast
22	chr3:141427200-141429600	Weak transcription	NHLF	lung
23	chr3:141427200-141429800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:141427200-141430000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:141427400-141429600	Weak transcription	Osteobl	bone
26	chr3:141427400-141429800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:141427400-141429800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:141427400-141429800	Weak transcription	HSMM	muscle

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