Variant report

Variant	rs9872269
Chromosome Location	chr3:100792285-100792286
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28815241	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58135096	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9826267	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9827418	0.85[AFR][1000 genomes]
rs9832345	1.00[AMR][1000 genomes]
rs9861396	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9863991	0.85[AFR][1000 genomes]
rs9872095	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880347	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv591176	chr3:100763611-100799644	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv591177	chr3:100767398-100799644	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100789200-100800800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:100791800-100795400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:100791800-100796200	Weak transcription	Stomach Mucosa	stomach
4	chr3:100792000-100792400	Enhancers	A549	lung
5	chr3:100792000-100794000	Enhancers	HUVEC	blood vessel
6	chr3:100792000-100796400	Weak transcription	Osteobl	bone
7	chr3:100792200-100796200	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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