Variant report

Variant	rs9873081
Chromosome Location	chr3:139854022-139854023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12634879	0.88[EUR][1000 genomes]
rs1316385	0.93[EUR][1000 genomes]
rs1317898	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1320256	0.84[EUR][1000 genomes]
rs1320259	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1320260	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1320261	0.88[ASN][1000 genomes]
rs2350275	1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2350276	1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2350281	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2350508	0.93[EUR][1000 genomes]
rs2350509	0.84[EUR][1000 genomes]
rs2882369	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2882370	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4317058	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4596106	1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683480	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683481	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683808	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439899	0.82[EUR][1000 genomes]
rs6791658	0.83[EUR][1000 genomes]
rs6796645	1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7355921	0.82[EUR][1000 genomes]
rs7645343	0.83[EUR][1000 genomes]
rs9283594	0.88[EUR][1000 genomes]
rs9289599	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs939189	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs939190	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9817495	0.82[EUR][1000 genomes]
rs9818360	0.82[EUR][1000 genomes]
rs9818488	0.88[EUR][1000 genomes]
rs9822943	0.88[EUR][1000 genomes]
rs9823483	0.93[EUR][1000 genomes]
rs9855981	0.88[EUR][1000 genomes]
rs9862740	0.88[EUR][1000 genomes]
rs9862768	0.88[EUR][1000 genomes]
rs9868890	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9871857	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9873941	0.88[EUR][1000 genomes]
rs9878323	0.88[EUR][1000 genomes]
rs9990262	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139835800-139862800	Weak transcription	HSMMtube	muscle
2	chr3:139842600-139854200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:139853400-139855000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:139854000-139854400	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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