Variant report

Variant	rs9873130
Chromosome Location	chr3:56025462-56025463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17056313	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17056364	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28372290	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73075385	0.82[ASN][1000 genomes]
rs73083339	0.82[ASN][1000 genomes]
rs73083355	0.82[ASN][1000 genomes]
rs9809692	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9820592	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9829405	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9830643	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9832211	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841052	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9847697	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9857795	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9859846	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56021400-56028200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:56021400-56034800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:56022600-56028200	Weak transcription	Fetal Kidney	kidney
4	chr3:56023400-56032400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:56023600-56026800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:56023600-56028000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:56023600-56028200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:56023600-56034600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:56023800-56028000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:56023800-56032600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:56025000-56029800	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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