Variant report

Variant	rs9873621
Chromosome Location	chr3:143357546-143357547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1242065	0.83[ASN][1000 genomes]
rs1242066	0.83[ASN][1000 genomes]
rs1242068	0.83[ASN][1000 genomes]
rs1242074	0.85[ASN][1000 genomes]
rs1242077	0.85[ASN][1000 genomes]
rs1242079	0.85[ASN][1000 genomes]
rs13101180	0.80[ASN][1000 genomes]
rs7613679	0.90[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143328200-143376200	Weak transcription	Ovary	ovary
2	chr3:143346400-143363200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:143351600-143369800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:143354200-143373600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:143354200-143374000	Weak transcription	Esophagus	oesophagus
6	chr3:143355400-143358400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr3:143356800-143359800	Weak transcription	Fetal Lung	lung
8	chr3:143357000-143357800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
9	chr3:143357400-143358600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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