Variant report

Variant	rs9874693
Chromosome Location	chr3:111326856-111326857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9882986	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111299400-111328600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:111314200-111327200	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr3:111314400-111328600	Weak transcription	Thymus	Thymus
4	chr3:111321600-111328200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:111323200-111327000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:111323600-111328600	Weak transcription	Primary B cells from cord blood	blood
7	chr3:111323800-111328400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:111324200-111327000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:111324200-111327800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:111324400-111336800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:111324600-111327000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:111324800-111329200	Weak transcription	Osteobl	bone
13	chr3:111325200-111328600	Genic enhancers	Dnd41	blood
14	chr3:111325600-111327000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:111325800-111328000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:111326000-111327400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr3:111326200-111327000	Genic enhancers	Fetal Thymus	thymus
18	chr3:111326200-111327400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:111326200-111328600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:111326200-111329400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:111326200-111329400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr3:111326200-111330600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:111326400-111328600	Enhancers	HMEC	breast
24	chr3:111326600-111327000	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr3:111326600-111327200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr3:111326800-111327200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr3:111326800-111327200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:111326800-111327600	Genic enhancers	Primary T cells from cord blood	blood
29	chr3:111326800-111328600	Enhancers	NHEK	skin
30	chr3:111326800-111329000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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