Variant report

Variant	rs9875582
Chromosome Location	chr3:43250297-43250298
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13060695	0.81[AMR][1000 genomes]
rs13085652	0.81[AMR][1000 genomes]
rs17075317	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075335	0.85[CHB][hapmap];0.95[CHD][hapmap]
rs4404425	0.81[AMR][1000 genomes]
rs4444688	0.81[AMR][1000 genomes]
rs4683364	0.85[CHB][hapmap];0.95[CHD][hapmap]
rs7621298	0.85[JPT][hapmap]
rs9311336	0.81[AMR][1000 genomes]
rs9681394	0.85[JPT][hapmap]
rs9683242	0.82[JPT][hapmap]
rs9820946	0.84[CHB][hapmap];0.81[AMR][1000 genomes]
rs9852399	0.81[AMR][1000 genomes]
rs9858012	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9875582	RPL14	cis	cerebellum	SCAN
rs9875582	SNRK	cis	cerebellum	SCAN
rs9875582	FYCO1	cis	parietal	SCAN
rs9875582	SLC25A38	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43243600-43252000	Weak transcription	Pancreas	Pancrea
2	chr3:43245000-43258800	Weak transcription	Right Atrium	heart
3	chr3:43247800-43259000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:43248200-43253200	Enhancers	Liver	Liver
5	chr3:43248600-43254800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:43249600-43252400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:43249800-43251800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:43249800-43252400	Weak transcription	Fetal Intestine Small	intestine
9	chr3:43249800-43254200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:43249800-43254400	Weak transcription	Fetal Intestine Large	intestine
11	chr3:43249800-43256000	Weak transcription	Fetal Kidney	kidney
12	chr3:43250000-43254200	Weak transcription	NHEK	skin
13	chr3:43250200-43251000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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