Variant report

Variant	rs9876627
Chromosome Location	chr3:141428681-141428682
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr3:141428058-141428746	K562	blood:	n/a	n/a
2	JUN	chr3:141427698-141428924	K562	blood:	n/a	n/a

Variant related genes	Relation type
TPT1P3	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2060014	1.00[ASN][1000 genomes]
rs28553332	1.00[ASN][1000 genomes]
rs66789997	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67167142	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818297	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821680	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9839365	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9842908	1.00[YRI][hapmap]
rs9876068	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883557	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv34073	chr3:141395818-141448774	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv877552	chr3:141420562-141466147	Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141416400-141429800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:141425400-141433000	Enhancers	HUVEC	blood vessel
3	chr3:141426200-141431800	Enhancers	Placenta	Placenta
4	chr3:141427000-141429600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:141427200-141429600	Weak transcription	HMEC	breast
6	chr3:141427200-141429600	Weak transcription	NHLF	lung
7	chr3:141427200-141429800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:141427200-141430000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:141427400-141429600	Weak transcription	Osteobl	bone
10	chr3:141427400-141429800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:141427400-141429800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:141427400-141429800	Weak transcription	HSMM	muscle
13	chr3:141427600-141428800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:141427600-141429400	Weak transcription	NHDF-Ad	bronchial
15	chr3:141427600-141429600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:141427600-141429600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:141427600-141429600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:141427600-141429600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:141427600-141429600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:141427600-141429600	Weak transcription	NH-A	brain
21	chr3:141427600-141429800	Weak transcription	HSMMtube	muscle
22	chr3:141427800-141429000	Enhancers	K562	blood
23	chr3:141428200-141428800	Enhancers	Lung	lung

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