Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12695588	0.80[ASN][1000 genomes]
rs13323117	0.80[ASN][1000 genomes]
rs1450049	0.85[ASN][1000 genomes]
rs1450050	0.85[ASN][1000 genomes]
rs1450054	0.80[ASN][1000 genomes]
rs1868602	0.85[ASN][1000 genomes]
rs28536096	0.85[ASN][1000 genomes]
rs28539256	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28552867	0.80[ASN][1000 genomes]
rs28672850	0.85[ASN][1000 genomes]
rs6781596	0.85[ASN][1000 genomes]
rs6792070	0.85[ASN][1000 genomes]
rs6792137	0.85[ASN][1000 genomes]
rs6794137	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6809255	0.85[ASN][1000 genomes]
rs71315690	0.80[ASN][1000 genomes]
rs9817924	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9820287	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9837497	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9838197	0.80[ASN][1000 genomes]
rs9848953	0.91[ASN][1000 genomes]
rs9852976	0.85[ASN][1000 genomes]
rs9853271	0.85[ASN][1000 genomes]
rs9858099	0.85[ASN][1000 genomes]
rs9877504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000962	chr3:132115062-132919907	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132879000-132888800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:132881400-132892000	Weak transcription	Fetal Lung	lung
3	chr3:132882200-132888200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:132883600-132887600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:132883600-132888000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:132883600-132888000	Weak transcription	Fetal Brain Female	brain
7	chr3:132884200-132886400	Weak transcription	Fetal Brain Male	brain
8	chr3:132884600-132893800	Weak transcription	HSMM	muscle
9	chr3:132884800-132887600	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:132886000-132886400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:132886200-132886800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
12	chr3:132886200-132886800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:132886200-132890600	Enhancers	Brain Germinal Matrix	brain
14	chr3:132886200-132891600	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search: